PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.1353s0004.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ERF
Protein Properties Length: 221aa    MW: 23816.4 Da    PI: 8.694
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.1353s0004.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.51.1e-2079127355
                  AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          y+G+r+++ +g+W+AeIrdp++     r++lg+f t+eeAa+a+++a+ +++g
  Kalax.1353s0004.1.p  79 YRGIRRRP-WGKWAAEIRDPRK---GVRVWLGTFPTPEEAARAYDQAAIRIRG 127
                          9*******.**********954...4************************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541715.75E-2378136IPR016177DNA-binding domain
PROSITE profilePS5103225.14678135IPR001471AP2/ERF domain
PfamPF008471.3E-1478127IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.6E-3378136IPR001471AP2/ERF domain
SMARTSM003801.1E-3778141IPR001471AP2/ERF domain
CDDcd000184.28E-3279136No hitNo description
PRINTSPR003672.4E-117990IPR001471AP2/ERF domain
PRINTSPR003672.4E-11101117IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MCGGAVISSF IGGNRDRNLT TRDFWHQLDP SSDLFGFNST TNSKTPITAA DQNPKEKKSG  60
NGTNGAAGGK PPRVRKTAYR GIRRRPWGKW AAEIRDPRKG VRVWLGTFPT PEEAARAYDQ  120
AAIRIRGDKA KLNFPEKRRR VEPDELTHPS YERVGPASAG ADDGSLICGQ NQRSVAGSGL  180
EDTISDLESL LGLDDGSGSG YLNGLGDPVD LGWMDGDWSI *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A9e-2279135663ATERF1
3gcc_A9e-2279135663ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1136140KRRRV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007035662.11e-54Ethylene-responsive element binding protein, putative
SwissprotP427363e-40RAP23_ARATH; Ethylene-responsive transcription factor RAP2-3
TrEMBLA0A061EPL01e-54A0A061EPL0_THECC; Ethylene-responsive element binding protein, putative
STRINGVIT_05s0077g01860.t014e-51(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16770.14e-41ethylene-responsive element binding protein